Detailed information of matrix profile UN0923.1

  1. Home
  2. Matrix > UN0923.1
This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

Community curation

Your email will only be used by our team to contact you.

If your contribution is significant, we will acknowledge it in the manuscript of the JASPAR upcoming release. We do not share your information with any third parties.

Profile summary

Name: VSX2::SOX11
Matrix ID: UN0923.1
Class: Homeo domain factors::High-mobility group (HMG) domain factors
Family: Paired-related HD factors::SOX-related factors
Collection: UNVALIDATED
Taxon: Vertebrates
Species: Homo sapiens
Data Type: CAP-SELEX
Validation:
Uniprot ID: P58304   P35716  
Source: 40205063
Comment:

Sequence logo

Frequency matrix

         
A [ 70 590 38 19 115 31 181 211 372 159 46 740 1117 17 68 927 ]
C [ 826 33 26 19 95 33 376 364 302 548 626 295 116 21 79 56 ]
G [ 43 103 67 15 1122 21 253 158 309 306 82 108 59 10 40 176 ]
T [ 413 626 1221 1299 20 1267 542 619 369 339 598 209 60 1304 1165 193 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0923.1 UN0923 1 VSX2::SOX11 Homo sapiens
Paired-related HD factors::SOX-related factors Homeo domain factors::High-mobility group (HMG) domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: