JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1678.3 NTL8 Arabidopsis thaliana GCM domain factors NAC
MA1679.1 RAP2-1 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1679.2 RAP2-1 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1682.1 TCX3 Arabidopsis thaliana CPP
MA1682.2 TCX3 Arabidopsis thaliana CPP
MA1683.1 FOXA3 Homo sapiens Fork head/winged helix factors FOX
MA1683.2 FOXA3 Homo sapiens Fork head/winged helix factors FOX
MA1684.1 Foxn1 Mus musculus Fork head/winged helix factors FOX
MA1685.1 ARF10 Zea mays B3 ARF
MA1685.2 ARF10 Zea mays B3 ARF
Showing 10 profiles of page 319 from 458 pages

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Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.