Detailed information of matrix profile UN1142.1

  1. Home
  2. Matrix > UN1142.1
This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

Community curation

Your email will only be used by our team to contact you.

If your contribution is significant, we will acknowledge it in the manuscript of the JASPAR upcoming release. We do not share your information with any third parties.

Profile summary

Name: CLOCK::FOXD2
Matrix ID: UN1142.1
Class: Basic helix-loop-helix factors (bHLH)::Fork head/winged helix factors
Family: PAS domain factors::FOX
Collection: UNVALIDATED
Taxon: Vertebrates
Species: Homo sapiens
Data Type: CAP-SELEX
Validation:
Uniprot ID: O15516   O60548  
Source: 40205063
Comment:

Sequence logo

Frequency matrix

         
A [ 80 29 2 8 6 431 5 23 4 459 396 45 185 417 60 629 7 72 0 8 1 ]
C [ 10 0 6 0 3 3 220 42 49 11 37 288 85 134 582 1 541 0 8 4 83 ]
G [ 9 613 1 20 60 131 0 142 1 1 165 139 322 95 0 13 5 570 4 591 254 ]
T [ 547 4 637 618 577 81 421 439 592 175 48 174 54 0 4 3 93 4 634 43 308 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN1142.1 UN1142 1 CLOCK::FOXD2 Homo sapiens
PAS domain factors::FOX Basic helix-loop-helix factors (bHLH)::Fork head/winged helix factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: