Detailed information of matrix profile UN1135.1

  1. Home
  2. Matrix > UN1135.1
This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

Community curation

Your email will only be used by our team to contact you.

If your contribution is significant, we will acknowledge it in the manuscript of the JASPAR upcoming release. We do not share your information with any third parties.

Profile summary

Name: SOX30::TBX4
Matrix ID: UN1135.1
Class: High-mobility group (HMG) domain factors::T-Box factors
Family: SOX-related factors::TBX2-related factors
Collection: UNVALIDATED
Taxon: Vertebrates
Species: Homo sapiens
Data Type: CAP-SELEX
Validation:
Uniprot ID: O94993   P57082  
Source: 40205063
Comment:

Sequence logo

Frequency matrix

         
A [ 241 1129 2866 0 3408 11 105 105 462 319 249 680 2820 163 211 350 179 172 ]
C [ 1174 1468 159 3699 48 3675 3278 209 820 903 2035 1716 302 187 187 220 197 1479 ]
G [ 136 1035 335 10 244 36 144 31 169 381 626 942 120 222 92 2984 233 393 ]
T [ 2171 90 362 13 22 0 195 3377 2271 2119 812 384 480 3150 3232 168 3113 1678 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN1135.1 UN1135 1 SOX30::TBX4 Homo sapiens
SOX-related factors::TBX2-related factors High-mobility group (HMG) domain factors::T-Box factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: