Detailed information of matrix profile UN0409.1

  1. Home
  2. Matrix > UN0409.1
This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

Community curation

Your email will only be used by our team to contact you.

If your contribution is significant, we will acknowledge it in the manuscript of the JASPAR upcoming release. We do not share your information with any third parties.

Profile summary

Name: RKD2
Matrix ID: UN0409.1
Class: RWP-RK
Family:
Collection: UNVALIDATED
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation:
Uniprot ID: Q9CA66  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 261 383 247 20 750 985 102 405 7 66 934 968 405 349 5 191 17 383 193 ]
C [ 155 90 7 9 15 15 31 244 397 148 0 0 201 453 0 65 797 124 351 ]
G [ 358 370 726 952 165 0 687 111 68 763 51 17 264 194 995 135 2 286 210 ]
T [ 227 157 20 19 70 0 181 240 528 22 15 15 129 3 0 610 184 206 247 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0409.1 UN0409 1 RKD2 Arabidopsis thaliana
RWP-RK
UN0409.2 UN0409 2 RKD2 Arabidopsis thaliana
RWP-RK
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: