Detailed information of matrix profile MA2131.1

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Profile summary
Name: egl-38
Matrix ID: MA2131.1
Class: Paired box factors
Family: Paired domain only
Collection: CORE
Taxon: Nematodes
Species: Caenorhabditis elegans
Data Type: PBM
Validation: 31398431
Uniprot ID: G5ED14  
Source: 25215497
Comment: Class and TF information inffered based on sequence similarity search using DELTA-BLAST within Nr. database and limiting the search to vertebrates

Sequence logo

Frequency matrix

         
A [ 971 10 10 5 5 5 985 5 10 971 10 ]
C [ 10 971 971 5 5 5 5 495 971 10 971 ]
G [ 10 10 10 985 5 985 5 5 10 10 10 ]
T [ 10 10 10 5 985 5 5 495 10 10 10 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA2131.1 MA2131 1 egl-38 Caenorhabditis elegans
Paired domain only Paired box factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

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