| Name: | SoxF |
| Matrix ID: | MA1918.1 |
| Class: | High-mobility group (HMG) domain factors |
| Family: | SOX-related factors |
| Collection: | CORE |
| Taxon: | Urochordates |
| Species: | Ciona intestinalis |
| Data Type: | SELEX |
| Validation: | 24680932 |
| Uniprot ID: | Q4H2R8 |
| Source: | 31267468 |
| Comment: |
| A [ | 312 | 330 | 319 | 315 | 350 | 378 | 329 | 662 | 915 | 20 | 962 | 946 | 23 | 294 | 258 | 284 | 367 | 305 | 266 | 211 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 198 | 203 | 216 | 226 | 195 | 179 | 157 | 99 | 20 | 888 | 15 | 9 | 13 | 94 | 204 | 246 | 220 | 191 | 159 | 133 | ] |
| G [ | 187 | 177 | 188 | 217 | 212 | 208 | 260 | 123 | 22 | 29 | 8 | 10 | 6 | 327 | 350 | 176 | 150 | 130 | 103 | 238 | ] |
| T [ | 303 | 290 | 277 | 242 | 243 | 235 | 254 | 116 | 43 | 64 | 15 | 35 | 958 | 285 | 188 | 293 | 262 | 374 | 472 | 418 | ] |
Binding sites information
No Binding sites available for this model.
External links
| Matrix ID | Base ID | Version | Name | Species | Family | Class | Sequence logo |
|---|---|---|---|---|---|---|---|
| MA1918.1 | MA1918 | 1 | SoxF |
Ciona intestinalis
|
SOX-related factors | High-mobility group (HMG) domain factors |  |
| MA1918.2 | MA1918 | 2 | SoxF |
Ciona intestinalis
|
SOX-related factors | High-mobility group (HMG) domain factors |  |
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.
Description:
Alias:
Symbol:
Consensus:
Included Models:
GC Content: