| Name: | SoxB1 |
| Matrix ID: | MA1915.1 |
| Class: | High-mobility group (HMG) domain factors |
| Family: | SOX-related factors |
| Collection: | CORE |
| Taxon: | Urochordates |
| Species: | Ciona intestinalis |
| Data Type: | SELEX |
| Validation: | 24680932 |
| Uniprot ID: | Q4H2S3 |
| Source: | 31267468 |
| Comment: |
| A [ | 325 | 330 | 280 | 399 | 362 | 271 | 352 | 861 | 14 | 979 | 855 | 14 | 160 | 254 | 273 | 546 | 300 | 152 | 121 | 162 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 226 | 251 | 336 | 199 | 190 | 169 | 217 | 30 | 913 | 7 | 11 | 8 | 37 | 198 | 297 | 170 | 99 | 71 | 77 | 75 | ] |
| G [ | 196 | 170 | 178 | 189 | 202 | 244 | 213 | 32 | 30 | 6 | 10 | 5 | 672 | 247 | 148 | 101 | 84 | 66 | 436 | 288 | ] |
| T [ | 253 | 249 | 206 | 214 | 246 | 316 | 219 | 77 | 42 | 8 | 124 | 973 | 131 | 301 | 282 | 184 | 517 | 711 | 366 | 475 | ] |
Binding sites information
No Binding sites available for this model.
External links
| Matrix ID | Base ID | Version | Name | Species | Family | Class | Sequence logo |
|---|---|---|---|---|---|---|---|
| MA1915.1 | MA1915 | 1 | SoxB1 |
Ciona intestinalis
|
SOX-related factors | High-mobility group (HMG) domain factors |  |
| MA1915.2 | MA1915 | 2 | SoxB1 |
Ciona intestinalis
|
SOX-related factors | High-mobility group (HMG) domain factors |  |
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.
Description:
Alias:
Symbol:
Consensus:
Included Models:
GC Content: