Detailed information of matrix profile MA1814.1

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Profile summary
Name: RIN
Matrix ID: MA1814.1
Class: MADS box factors
Family: Type II
Collection: CORE
Taxon: Plants
Species: Solanum lycopersicum
Data Type: ChIP-seq
Validation: 18363783
Uniprot ID: Q8S4L4  
Source: 30250279
Comment:

Sequence logo

Frequency matrix

         
A [ 1259 1295 682 235 3927 248 469 203 357 285 331 265 1089 1882 1945 ]
C [ 576 689 3258 573 239 163 70 33 58 65 32 110 525 765 689 ]
G [ 683 719 246 85 87 98 55 50 99 143 4270 3924 2029 670 680 ]
T [ 2305 2120 637 3930 570 4314 4229 4537 4309 4330 190 524 1180 1506 1509 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1814.1 MA1814 1 RIN Solanum lycopersicum
Type II MADS box factors
MA1814.2 MA1814 2 RIN Solanum lycopersicum
Type II MADS box factors
     

-log(P-value) = 11.9875

TFFM details

TFFM ID: TFFM0935.1

ChIP-seq Centrality
-log(P-value): 4230.85

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0935.1

ChIP-seq Centrality
-log(P-value): 4291.9

TFFM detailed summary logos

Description:

Alias:

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Consensus:

Included Models:

GC Content: