Detailed information of matrix profile MA1759.1

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Profile summary
Name: HSFA4A
Matrix ID: MA1759.1
Class: Heat shock factors
Family: HSF
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 8689565
Uniprot ID: O49403  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 134 127 83 7 12 7 893 8 987 868 132 207 122 50 85 130 339 249 432 ]
C [ 160 543 28 8 970 90 28 0 0 17 185 482 45 78 689 235 172 199 140 ]
G [ 376 135 35 0 8 7 73 988 5 18 576 189 28 75 72 93 204 316 200 ]
T [ 331 195 853 985 10 896 5 3 8 97 107 122 805 796 154 541 285 237 227 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1759.1 MA1759 1 HSFA4A Arabidopsis thaliana
HSF Heat shock factors
MA1759.2 MA1759 2 HSFA4A Arabidopsis thaliana
HSF Heat shock factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

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Consensus:

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GC Content: