Detailed information of matrix profile MA1546.2

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Profile summary
Name: PAX3
Matrix ID: MA1546.2
Class: Paired box factors
Family: Paired plus homeo domain
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 9632796
Uniprot ID: P23760  
Source: 28473536
Comment: TF has several motif variants.

Sequence logo

Frequency matrix

         
A [ 112 1 181 9 1344 13 161 3 197 512 1344 50 83 1344 ]
C [ 880 2 79 1344 2 1344 1 836 414 228 152 43 138 66 ]
G [ 464 1344 6 23 19 2 1344 508 127 138 353 24 52 108 ]
T [ 167 126 1344 263 2 201 0 6 606 467 86 1344 1344 215 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1546.1 MA1546 1 PAX3 Homo sapiens
Paired plus homeo domain Paired box factors
MA1546.2 MA1546 2 PAX3 Homo sapiens
Paired plus homeo domain Paired box factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

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