Detailed information of matrix profile MA1541.1

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Profile summary
Name: NR6A1
Matrix ID: MA1541.1
Class: Nuclear receptors with C4 zinc fingers
Family: GCNF-related receptors (NR6)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 11578963
Uniprot ID: Q15406  
Source: 28473536
Comment:

Sequence logo

Frequency matrix

         
A [ 230 41 254 896 373 62 65 14 40 896 453 62 51 11 132 896 216 ]
C [ 207 359 109 355 524 896 35 2 29 26 443 896 72 44 342 348 313 ]
G [ 177 20 896 185 11 15 96 0 896 74 12 9 91 4 896 473 197 ]
T [ 282 896 39 91 29 21 896 896 7 1 19 13 896 896 124 255 171 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1541.1 MA1541 1 NR6A1 Homo sapiens
GCNF-related receptors (NR6) Nuclear receptors with C4 zinc fingers
MA1541.2 MA1541 2 NR6A1 Homo sapiens
GCNF-related receptors (NR6) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0544.1

ChIP-seq Centrality
-log(P-value): 5461.15

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0544.1

ChIP-seq Centrality
-log(P-value): 3305.01

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: