Detailed information of matrix profile MA1532.1

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Profile summary
Name: NR1D2
Matrix ID: MA1532.1
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 14559106
Uniprot ID: Q14995  
Source: 28473536
Comment: ONLY IF first 5 bp are removed!!!

Sequence logo

Frequency matrix

         
A [ 738 36 43 5 61 1655 236 69 765 14 40 136 32 1655 390 ]
C [ 121 1 4 92 1655 0 299 128 34 0 4 125 1655 18 278 ]
G [ 917 1655 1655 470 23 29 865 191 890 1655 1655 268 134 554 457 ]
T [ 62 557 56 1655 2518 91 255 1655 40 797 17 1655 662 94 530 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1532.1 MA1532 1 NR1D2 Homo sapiens
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
MA1532.2 MA1532 2 NR1D2 Homo sapiens
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

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