Detailed information of matrix profile MA1441.1

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Profile summary
Name: lim-7
Matrix ID: MA1441.1
Class: Homeo domain factors
Family: HD-LIM
Collection: CORE
Taxon: Nematodes
Species: Caenorhabditis briggsae
Data Type: PBM
Validation: 18585359
Uniprot ID: A8WVZ2  
Source: 31133749
Comment: like ISL2, lim-7 has V,Q, C at positions 47, 50, 54. Hence, it binds to CAA/CTTA.

Sequence logo

Frequency matrix

         
A [ 200 234 102 0 908 809 95 199 244 340 241 ]
C [ 200 512 102 0 0 0 0 0 49 411 241 ]
G [ 200 126 192 0 0 0 0 314 439 124 147 ]
T [ 399 126 602 999 90 189 903 486 266 124 368 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1441.1 MA1441 1 lim-7 Caenorhabditis briggsae
HD-LIM Homeo domain factors
MA1441.2 MA1441 2 lim-7 Caenorhabditis briggsae
HD-LIM Homeo domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

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