JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0504.2 NR2C2 Homo sapiens Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0505.1 Nr5a2 Mus musculus Nuclear receptors with C4 zinc fingers FTZF1-related (NR5A)
MA0505.2 Nr5A2 Mus musculus Nuclear receptors with C4 zinc fingers FTZF1-related (NR5A)
MA0505.3 Nr5a2 Mus musculus Nuclear receptors with C4 zinc fingers FTZF1-related (NR5A)
MA0506.1 NRF1 Homo sapiens Uncharacterized NRF
MA0506.2 Nrf1 Mus musculus Uncharacterized NRF
MA0506.3 Nrf1 Mus musculus Uncharacterized NRF
MA0507.1 POU2F2 Homo sapiens Homeo domain factors POU domain factors
MA0507.2 POU2F2 Homo sapiens Homeo domain factors POU domain factors
MA0507.3 POU2F2 Homo sapiens Homeo domain factors POU domain factors
Showing 10 profiles of page 99 from 458 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.