JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA0443.1 btd Drosophila melanogaster C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0443.2 btd Drosophila melanogaster C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0444.1 CG34031 Drosophila melanogaster Homeo domain factors NK
MA0445.1 D Drosophila melanogaster High-mobility group (HMG) domain factors SOX-related factors
MA0446.1 fkh Drosophila melanogaster Fork head/winged helix factors FOX
MA0447.1 gt Drosophila melanogaster Basic leucine zipper factors (bZIP) CEBP-related
MA0448.1 H2.0 Drosophila melanogaster Homeo domain factors NK
MA0449.1 hry Drosophila melanogaster Zipper-type Helix-Loop-Helix
MA0450.1 hkb Drosophila melanogaster C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0451.1 kni Drosophila melanogaster Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
Showing 10 profiles of page 85 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.