JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0425.1 YGR067C Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0425.2 YGR067C Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0426.1 YHP1 Saccharomyces cerevisiae Homeo domain factors
MA0428.1 YKL222C Saccharomyces cerevisiae C6 zinc cluster factors
MA0428.2 YKL222C Saccharomyces cerevisiae C6 zinc cluster factors
MA0429.1 YLL054C Saccharomyces cerevisiae C6 zinc cluster factors
MA0430.1 YLR278C Saccharomyces cerevisiae C6 zinc cluster factors
MA0430.2 YLR278C Saccharomyces cerevisiae C6 zinc cluster factors
MA0431.1 TDA9 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0431.2 TDA9 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
Showing 10 profiles of page 82 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.