JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0314.1 HAP3 Saccharomyces cerevisiae Heteromeric CCAAT-binding factors Heteromeric CCAAT-binding
MA0314.2 HAP3 Saccharomyces cerevisiae Heteromeric CCAAT-binding factors Heteromeric CCAAT-binding
MA0314.3 HAP3 Saccharomyces cerevisiae Heteromeric CCAAT-binding factors Heteromeric CCAAT-binding
MA0316.1 HAP5 Saccharomyces cerevisiae Heteromeric CCAAT-binding factors Heteromeric CCAAT-binding
MA0316.2 HAP5 Saccharomyces cerevisiae Heteromeric CCAAT-binding factors Heteromeric CCAAT-binding
MA0317.1 HCM1 Saccharomyces cerevisiae Fork head/winged helix factors FOX
MA0317.2 HCM1 Saccharomyces cerevisiae Fork head/winged helix factors FOX
MA0318.1 HMRA2 Saccharomyces cerevisiae Homeo domain factors TALE-type homeo domain factors
MA0319.1 HSF1 Saccharomyces cerevisiae Heat shock factors HSF factors
MA0319.2 HSF1 Saccharomyces cerevisiae Heat shock factors HSF factors
Showing 10 profiles of page 64 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.