JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0296.1 FKH1 Saccharomyces cerevisiae Fork head/winged helix factors FOX
MA0296.2 FKH1 Saccharomyces cerevisiae Fork head/winged helix factors FOX
MA0297.1 FKH2 Saccharomyces cerevisiae Fork head/winged helix factors FOX
MA0299.1 GAL4 Saccharomyces cerevisiae C6 zinc cluster factors
MA0300.1 GAT1 Saccharomyces cerevisiae Other C4 zinc finger-type factors C4-GATA-related
MA0300.2 GAT1 Saccharomyces cerevisiae Other C4 zinc finger-type factors C4-GATA-related
MA0301.1 GAT3 Saccharomyces cerevisiae Other C4 zinc finger-type factors C4-GATA-related
MA0301.2 GAT3 Saccharomyces cerevisiae Other C4 zinc finger-type factors C4-GATA-related
MA0302.1 GAT4 Saccharomyces cerevisiae Other C4 zinc finger-type factors C4-GATA-related
MA0302.2 GAT4 Saccharomyces cerevisiae Other C4 zinc finger-type factors C4-GATA-related
Showing 10 profiles of page 61 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.