JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0241.1 ro Drosophila melanogaster Homeo domain factors HOX
MA0242.1 Bgb::run Drosophila melanogaster Runt domain factors Runt-related factors
MA0243.1 sd Drosophila melanogaster TEA domain factors TEF-1-related factors
MA0243.2 sd Drosophila melanogaster TEA domain factors TEF-1-related factors
MA0244.1 slbo Drosophila melanogaster Basic leucine zipper factors (bZIP) CEBP-related
MA0245.1 slou Drosophila melanogaster Homeo domain factors NK
MA0246.1 so Drosophila melanogaster Homeo domain factors HD-SINE
MA0247.1 tin Drosophila melanogaster Homeo domain factors Homeo
MA0247.2 tin Drosophila melanogaster Homeo domain factors Homeo
MA0247.3 tin Drosophila melanogaster Homeo domain factors Homeo
Showing 10 profiles of page 52 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.