JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0016.1 usp Drosophila melanogaster Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0016.2 usp Drosophila melanogaster Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0017.1 NR2F1 Homo sapiens Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0017.2 NR2F1 Homo sapiens Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0017.3 NR2F1 Homo sapiens Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0018.1 CREB1 Homo sapiens Basic leucine zipper factors (bZIP) CREB-related factors
MA0018.2 CREB1 Homo sapiens Mus musculus Rattus norvegicus Basic leucine zipper factors (bZIP) CREB-related factors
MA0018.3 CREB1 Homo sapiens Basic leucine zipper factors (bZIP) CREB-related factors
MA0018.4 CREB1 Homo sapiens Basic leucine zipper factors (bZIP) CREB-related factors
MA0018.5 CREB1 Homo sapiens Basic leucine zipper factors (bZIP) CREB-related factors
Showing 10 profiles of page 5 from 458 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.