JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0197.3 nub Drosophila melanogaster Homeo domain factors POU domain factors
MA0198.1 OdsH Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0199.1 Optix Drosophila melanogaster Homeo domain factors HD-SINE
MA0200.1 Pph13 Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0200.2 Pph13 Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0201.1 Ptx1 Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0202.1 Rx Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0203.1 Scr Drosophila melanogaster Homeo domain factors HOX
MA0204.1 Six4 Drosophila melanogaster Homeo domain factors HD-SINE
MA0205.1 Trl Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
Showing 10 profiles of page 47 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.