JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0183.1 HHEX Drosophila melanogaster Homeo domain factors NK
MA0184.1 CG9876 Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0184.2 CG9876 Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0185.1 Deaf1 Drosophila melanogaster SAND domain factors DEAF
MA0185.2 Deaf1 Drosophila melanogaster SAND domain factors DEAF
MA0186.1 Dfd Drosophila melanogaster Homeo domain factors HOX
MA0187.1 Dll Drosophila melanogaster Homeo domain factors NK
MA0188.1 Dr Drosophila melanogaster Homeo domain factors NK
MA0189.1 E5 Drosophila melanogaster Homeo domain factors NK
MA0189.2 E5 Drosophila melanogaster Homeo domain factors NK
Showing 10 profiles of page 45 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.