JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA0106.2 TP53 Homo sapiens p53 domain factors p53-related factors
MA0106.3 TP53 Homo sapiens p53 domain factors p53-related factors
MA0107.1 RELA Homo sapiens Rel homology region (RHR) factors NF-kappaB-related factors
MA0108.1 TBP NA TATA-binding proteins TBP-related factors
MA0108.2 TBP NA TATA-binding proteins TBP-related factors
MA0108.3 TBP NA TATA-binding proteins TBP-related factors
MA0110.1 ATHB-5 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0110.2 ATHB-5 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0110.3 ATHB-5 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0110.4 ATHB-5 Arabidopsis thaliana Homeo domain factors HD-ZIP
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Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.