JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0056.2 MZF1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0056.3 MZF1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0058.1 MAX Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0058.2 MAX Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0058.3 MAX Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0058.4 MAX Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0059.1 MAX::MYC Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0059.2 MAX::MYC Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0060.1 NFYA Xenopus laevis Xenopus tropicalis Gallus gallus Homo sapiens Bos taurus Oryctolagus cuniculus Mus musculus Rattus norvegicus Heteromeric CCAAT-binding factors Heteromeric CCAAT-binding
MA0060.2 NFYA Homo sapiens Heteromeric CCAAT-binding factors Heteromeric CCAAT-binding
Showing 10 profiles of page 15 from 458 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.