JASPAR Collection UNVALIDATED

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Total 1363 profiles

These profiles are regarded as unvalidated because our curators failed to find any orthogonal support from existing literature. We encourage the community to perform experiments and/or point us to literature that our curators missed in order to support these profiles.
Display profiles
ID Name Species Class Family Sequence logo
UN0406.1 NLP4 Arabidopsis thaliana RWP-RK
UN0406.2 NLP4 Arabidopsis thaliana RWP-RK
UN0407.1 REM1 Arabidopsis thaliana B3 REM
UN0407.2 REM1 Arabidopsis thaliana B3 REM
UN0408.1 REM21 Arabidopsis thaliana B3 REM
UN0408.2 REM21 Arabidopsis thaliana B3 REM
UN0409.1 RKD2 Arabidopsis thaliana RWP-RK
UN0409.2 RKD2 Arabidopsis thaliana RWP-RK
UN0410.1 STKL2 Arabidopsis thaliana Tryptophan cluster factors Storekeeper
UN0410.2 STKL2 Arabidopsis thaliana Tryptophan cluster factors Storekeeper
Showing 10 profiles of page 33 from 137 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


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Download the PFMs of the model(s) selected in four different formats.