JASPAR CORE

  1. Home
  2. Collection CORE

Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0402.2 SWI5 Saccharomyces cerevisiae A.T hook factors
MA0403.1 TBF1 Saccharomyces cerevisiae Tryptophan cluster factors Myb/SANT domain factors
MA0403.2 TBF1 Saccharomyces cerevisiae Tryptophan cluster factors Myb/SANT domain factors
MA0403.3 TBF1 Saccharomyces cerevisiae Tryptophan cluster factors Myb/SANT domain factors
MA0404.1 TBS1 Saccharomyces cerevisiae C6 zinc cluster factors
MA0405.1 TEA1 Saccharomyces cerevisiae C6 zinc cluster factors
MA0406.1 TEC1 Saccharomyces cerevisiae TEA domain factors
MA0406.2 TEC1 Saccharomyces cerevisiae TEA domain factors
MA0407.1 THI2 Saccharomyces cerevisiae C6 zinc cluster factors
MA0408.1 TOS8 Saccharomyces cerevisiae Homeo domain factors TALE-type homeo domain factors
Showing 10 profiles of page 78 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.