JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0396.2 STP3 Saccharomyces cerevisiae C2H2 zinc finger factors
MA0397.1 STP4 Saccharomyces cerevisiae C2H2 zinc finger factors
MA0397.2 STP4 Saccharomyces cerevisiae C2H2 zinc finger factors
MA0398.1 SUM1 Saccharomyces cerevisiae A.T hook factors
MA0398.2 SUM1 Saccharomyces cerevisiae A.T hook factors
MA0399.1 SUT1 Saccharomyces cerevisiae C6 zinc cluster factors
MA0400.1 SUT2 Saccharomyces cerevisiae C6 zinc cluster factors
MA0400.2 SUT2 Saccharomyces cerevisiae C6 zinc cluster factors
MA0401.1 SWI4 Saccharomyces cerevisiae APSES-type DNA-binding domain
MA0402.1 SWI5 Saccharomyces cerevisiae A.T hook factors
Showing 10 profiles of page 77 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.