JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0377.2 SFL1 Saccharomyces cerevisiae Heat shock factors HSF factors
MA0378.1 SFP1 Saccharomyces cerevisiae C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0378.2 SFP1 Saccharomyces cerevisiae C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0379.1 MOT2 Saccharomyces cerevisiae RING-type zinc finger
MA0380.1 SIP4 Saccharomyces cerevisiae C6 zinc cluster factors
MA0380.2 SIP4 Saccharomyces cerevisiae C6 zinc cluster factors
MA0381.1 SKN7 Saccharomyces cerevisiae Heat shock factors HSF factors
MA0381.2 SKN7 Saccharomyces cerevisiae Heat shock factors HSF factors
MA0382.1 SKO1 Saccharomyces cerevisiae Basic leucine zipper factors (bZIP)
MA0382.2 SKO1 Saccharomyces cerevisiae Basic leucine zipper factors (bZIP)
Showing 10 profiles of page 74 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.