JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA0360.1 RDR1 Saccharomyces cerevisiae C6 zinc cluster factors
MA0360.2 RDR1 Saccharomyces cerevisiae C6 zinc cluster factors
MA0361.1 RDS1 Saccharomyces cerevisiae C6 zinc cluster factors
MA0361.2 RDS1 Saccharomyces cerevisiae C6 zinc cluster factors
MA0362.1 RDS2 Saccharomyces cerevisiae C6 zinc cluster factors
MA0362.2 RDS2 Saccharomyces cerevisiae C6 zinc cluster factors
MA0363.1 REB1 Saccharomyces cerevisiae Tryptophan cluster factors Myb/SANT domain factors
MA0363.2 REB1 Saccharomyces cerevisiae Tryptophan cluster factors Myb/SANT domain factors
MA0363.3 REB1 Saccharomyces cerevisiae Tryptophan cluster factors Myb/SANT domain factors
MA0364.1 REI1 Saccharomyces cerevisiae C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
Showing 10 profiles of page 71 from 458 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.