JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0349.2 OPI1 Saccharomyces cerevisiae
MA0350.1 TOD6 Saccharomyces cerevisiae Tryptophan cluster factors Myb/SANT domain factors
MA0350.2 TOD6 Saccharomyces cerevisiae Tryptophan cluster factors Myb/SANT domain factors
MA0351.1 DOT6 Saccharomyces cerevisiae Tryptophan cluster factors Myb/SANT domain factors
MA0351.2 DOT6 Saccharomyces cerevisiae Tryptophan cluster factors Myb/SANT domain factors
MA0352.1 PDR1 Saccharomyces cerevisiae C6 zinc cluster factors
MA0352.2 PDR1 Saccharomyces cerevisiae C6 zinc cluster factors
MA0352.3 PDR1 Saccharomyces cerevisiae C6 zinc cluster factors
MA0353.1 PDR3 Saccharomyces cerevisiae C6 zinc cluster factors
MA0354.1 PDR8 Saccharomyces cerevisiae C6 zinc cluster factors
Showing 10 profiles of page 69 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.