JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0336.1 MGA1 Saccharomyces cerevisiae Heat shock factors HSF factors
MA0336.2 MGA1 Saccharomyces cerevisiae Heat shock factors HSF factors
MA0337.1 MIG1 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0337.2 MIG1 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0338.1 MIG2 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0338.2 MIG2 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0339.1 MIG3 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0339.2 MIG3 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0340.1 MOT3 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0341.1 MSN2 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
Showing 10 profiles of page 67 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.