JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0320.1 IME1 Saccharomyces cerevisiae
MA0321.1 INO2 Saccharomyces cerevisiae Basic helix-loop-helix factors (bHLH)
MA0322.1 INO4 Saccharomyces cerevisiae Basic helix-loop-helix factors (bHLH)
MA0323.1 IXR1 Saccharomyces cerevisiae High-mobility group (HMG) domain factors
MA0324.1 LEU3 Saccharomyces cerevisiae C6 zinc cluster factors
MA0325.1 LYS14 Saccharomyces cerevisiae C6 zinc cluster factors
MA0325.2 LYS14 Saccharomyces cerevisiae C6 zinc cluster factors
MA0326.1 MAC1 Saccharomyces cerevisiae Copper-fist DNA-binding domain
MA0327.1 HMRA1 Saccharomyces cerevisiae Homeo domain factors
MA0328.1 MATALPHA2 Saccharomyces cerevisiae Homeo domain factors TALE-type homeo domain factors
Showing 10 profiles of page 65 from 458 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.