JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA0279.2 CAD1 Saccharomyces cerevisiae Basic leucine zipper factors (bZIP)
MA0279.3 CAD1 Saccharomyces cerevisiae Basic leucine zipper factors (bZIP)
MA0280.1 CAT8 Saccharomyces cerevisiae C6 zinc cluster factors
MA0280.2 CAT8 Saccharomyces cerevisiae C6 zinc cluster factors
MA0281.1 CBF1 Saccharomyces cerevisiae Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0281.2 CBF1 Saccharomyces cerevisiae Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0281.3 CBF1 Saccharomyces cerevisiae Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0282.1 CEP3 Saccharomyces cerevisiae C6 zinc cluster factors
MA0282.2 CEP3 Saccharomyces cerevisiae C6 zinc cluster factors
MA0283.1 CHA4 Saccharomyces cerevisiae C6 zinc cluster factors
Showing 10 profiles of page 58 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.