JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0267.1 ACE2 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0267.2 ACE2 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0268.1 ADR1 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0268.2 ADR1 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0269.1 AFT1 Saccharomyces cerevisiae
MA0269.2 AFT1 Saccharomyces cerevisiae
MA0270.1 AFT2 Saccharomyces cerevisiae
MA0270.2 AFT2 Saccharomyces cerevisiae
MA0271.1 ARG80 Saccharomyces cerevisiae MADS box factors
MA0272.1 ARG81 Saccharomyces cerevisiae C6 zinc cluster factors
Showing 10 profiles of page 56 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.