JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0261.1 lin-14 Caenorhabditis elegans
MA0262.1 mab-3 Caenorhabditis elegans DM-type intertwined zinc finger factors DMRT factors
MA0263.1 ceh-10::ttx-3 Caenorhabditis elegans Homeo domain factors Paired-related HD factors::HD-LIM factors
MA0264.1 ceh-22 Caenorhabditis elegans Homeo domain factors NK
MA0264.2 ceh-22 Caenorhabditis elegans Homeo domain factors NK
MA0265.1 ABF1 Saccharomyces cerevisiae Basic helix-loop-helix factors (bHLH) Tal-related
MA0265.2 ABF1 Saccharomyces cerevisiae Basic helix-loop-helix factors (bHLH) Tal-related
MA0265.3 ABF1 Saccharomyces cerevisiae Basic helix-loop-helix factors (bHLH) Tal-related
MA0266.1 ABF2 Saccharomyces cerevisiae High-mobility group (HMG) domain factors
MA0266.2 ABF2 Saccharomyces cerevisiae High-mobility group (HMG) domain factors
Showing 10 profiles of page 55 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.