JASPAR CORE

  1. Home
  2. Collection CORE

Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0255.1 z Drosophila melanogaster
MA0255.2 z Drosophila melanogaster
MA0256.1 zen Drosophila melanogaster Homeo domain factors HOX
MA0257.1 zen2 Drosophila melanogaster Homeo domain factors HOX
MA0257.2 zen2 Drosophila melanogaster Homeo domain factors HOX
MA0258.1 ESR2 Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0258.2 ESR2 Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0259.1 ARNT::HIF1A Homo sapiens Oryctolagus cuniculus Mus musculus Rattus rattus Basic helix-loop-helix factors (bHLH) PAS domain factors
MA0259.2 ARNT::HIF1A Homo sapiens Oryctolagus cuniculus Mus musculus Rattus rattus Basic helix-loop-helix factors (bHLH) PAS domain factors
MA0260.1 che-1 Caenorhabditis elegans C2H2 zinc finger factors More than 3 adjacent zinc fingers
Showing 10 profiles of page 54 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.