JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0248.1 tup Drosophila melanogaster Homeo domain factors HD-LIM
MA0249.1 twi Drosophila melanogaster Basic helix-loop-helix factors (bHLH) Tal-related
MA0249.2 twi Drosophila melanogaster Basic helix-loop-helix factors (bHLH) Tal-related
MA0249.3 twi Drosophila melanogaster Basic helix-loop-helix factors (bHLH) Tal-related
MA0250.1 unc-4 Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0251.1 unpg Drosophila melanogaster Homeo domain factors HOX
MA0252.1 vis Drosophila melanogaster Homeo domain factors TALE-type homeo domain factors
MA0252.2 vis Drosophila melanogaster Homeo domain factors TALE-type homeo domain factors
MA0253.1 vnd Drosophila melanogaster Homeo domain factors NK
MA0254.1 vvl Drosophila melanogaster Homeo domain factors POU domain factors
Showing 10 profiles of page 53 from 458 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.