JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1918.2 SoxF Ciona intestinalis High-mobility group (HMG) domain factors SOX-related factors
MA1919.1 Tbox-a Ciona intestinalis T-Box factors TBX1-related factors
MA1919.2 Tbox-a Ciona intestinalis T-Box factors TBX1-related factors
MA1920.1 Tbox-b Ciona intestinalis T-Box factors TBX1-related factors
MA1920.2 Tbox-b Ciona intestinalis T-Box factors TBX1-related factors
MA1921.1 Tbx15/18/22 Ciona intestinalis T-Box factors TBX1-related factors
MA1921.2 Tbx15/18/22 Ciona intestinalis T-Box factors TBX1-related factors
MA1922.1 Tbx2/3 Ciona intestinalis T-Box factors TBX2-related factors
MA1922.2 Tbx2/3 Ciona intestinalis T-Box factors TBX2-related factors
MA1923.1 Tcf3-4-12 Ciona intestinalis Basic helix-loop-helix factors (bHLH) E2A
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.