JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1831.1 Zm00001d031796 Zea mays AP2/EREBP ERF/DREB
MA1831.2 Zm00001d031796 Zea mays AP2/EREBP ERF/DREB
MA1832.1 Zm00001d002364 Zea mays AP2/EREBP ERF/DREB
MA1832.2 Zm00001d002364 Zea mays AP2/EREBP ERF/DREB
MA1833.1 Zm00001d049364 Zea mays AP2/EREBP ERF/DREB
MA1833.2 Zm00001d049364 Zea mays AP2/EREBP ERF/DREB
MA1834.1 Zm00001d034298 Zea mays Basic helix-loop-helix factors (bHLH) bHLH
MA1834.2 Zm00001d034298 Zea mays Basic helix-loop-helix factors (bHLH) bHLH
MA1835.1 TFLG2-Zm00001d042777 Zea mays Basic leucine zipper factors (bZIP) Group D
MA1835.2 TFLG2-Zm00001d042777 Zea mays Basic leucine zipper factors (bZIP) Group D
Showing 10 profiles of page 345 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.