JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1824.1 Zm00001d005692 Zea mays Homeo domain factors HD-ZIP
MA1824.2 Zm00001d005692 Zea mays Homeo domain factors HD-ZIP
MA1825.1 Zm00001d044409 Zea mays Tryptophan cluster factors MYB-related
MA1825.2 Zm00001d044409 Zea mays Tryptophan cluster factors MYB-related
MA1828.1 Zm00001d038683 Zea mays TCP
MA1828.2 Zm00001d038683 Zea mays TCP
MA1829.1 Zm00001d035604 Zea mays Tryptophan cluster factors MYB
MA1829.2 Zm00001d035604 Zea mays Tryptophan cluster factors MYB
MA1830.1 Zm00001d015407 Zea mays Tryptophan cluster factors GARP_G2-like
MA1830.2 Zm00001d015407 Zea mays Tryptophan cluster factors GARP_G2-like
Showing 10 profiles of page 344 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.