JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1819.1 Zm00001d005892 Zea mays AP2/EREBP ERF/DREB
MA1819.2 Zm00001d005892 Zea mays AP2/EREBP ERF/DREB
MA1820.1 Zm00001d024324 Zea mays AP2/EREBP ERF/DREB
MA1820.2 Zm00001d024324 Zea mays AP2/EREBP ERF/DREB
MA1821.1 Zm00001d020595 Zea mays AP2/EREBP ERF/DREB
MA1821.2 Zm00001d020595 Zea mays AP2/EREBP ERF/DREB
MA1822.1 Zm00001d018571 Zea mays Basic leucine zipper factors (bZIP)
MA1822.2 Zm00001d018571 Zea mays Basic leucine zipper factors (bZIP)
MA1823.1 Zm00001d027846 Zea mays Other C4 zinc finger-type factors DOF
MA1823.2 Zm00001d027846 Zea mays Other C4 zinc finger-type factors DOF
Showing 10 profiles of page 343 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.