JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1808.2 GLYMA-06G314400 Glycine max Basic leucine zipper factors (bZIP) group A
MA1808.3 GLYMA-06G314400 Glycine max Basic leucine zipper factors (bZIP) group A
MA1809.1 GLYMA-07G038400 Glycine max C3H zinc finger factors GRF
MA1809.2 GLYMA-07G038400 Glycine max C3H zinc finger factors GRF
MA1810.1 GLYMA-08G357600 Glycine max B3 LAV
MA1810.2 GLYMA-08G357600 Glycine max B3 LAV
MA1811.1 GLYMA-13G317000 Glycine max Basic leucine zipper factors (bZIP) bZIP
MA1811.2 GLYMA-13G317000 Glycine max Basic leucine zipper factors (bZIP) bZIP
MA1811.3 GLYMA-13G317000 Glycine max Basic leucine zipper factors (bZIP) bZIP
MA1812.1 ASR1 Solanum lycopersicum Tryptophan cluster factors MYB-related
Showing 10 profiles of page 341 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.