JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1802.2 TRP5 Arabidopsis thaliana Tryptophan cluster factors MYB-related
MA1803.1 VIP1 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group I
MA1803.2 VIP1 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group I
MA1804.1 WIN1 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1804.2 WIN1 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1805.1 WRKY53 Arabidopsis thaliana GCM domain factors WRKY
MA1805.2 WRKY53 Arabidopsis thaliana GCM domain factors WRKY
MA1807.1 ZHD10 Arabidopsis thaliana Homeo domain factors PLINC
MA1807.2 ZHD10 Arabidopsis thaliana Homeo domain factors PLINC
MA1808.1 GLYMA-06G314400 Glycine max Basic leucine zipper factors (bZIP) group A
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Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.