JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1780.1 MYB92 Arabidopsis thaliana Tryptophan cluster factors MYB
MA1780.2 MYB92 Arabidopsis thaliana Tryptophan cluster factors MYB
MA1781.1 MYB94 Arabidopsis thaliana Tryptophan cluster factors MYB
MA1781.2 MYB94 Arabidopsis thaliana Tryptophan cluster factors MYB
MA1783.1 NAC005 Arabidopsis thaliana GCM domain factors NAC
MA1784.1 NAC011 Arabidopsis thaliana GCM domain factors NAC
MA1785.1 NAC018 Arabidopsis thaliana GCM domain factors NAC
MA1785.2 NAC018 Arabidopsis thaliana GCM domain factors NAC
MA1786.1 NAC019 Arabidopsis thaliana GCM domain factors NAC
MA1786.2 NAC019 Arabidopsis thaliana GCM domain factors NAC
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Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.