JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1770.2 MYB40 Arabidopsis thaliana Tryptophan cluster factors MYB
MA1771.1 MYB41 Arabidopsis thaliana Tryptophan cluster factors MYB
MA1771.2 MYB41 Arabidopsis thaliana Tryptophan cluster factors MYB
MA1772.1 MYB43 Arabidopsis thaliana Tryptophan cluster factors MYB
MA1772.2 MYB43 Arabidopsis thaliana Tryptophan cluster factors MYB
MA1773.1 MYB51 Arabidopsis thaliana Tryptophan cluster factors MYB
MA1773.2 MYB51 Arabidopsis thaliana Tryptophan cluster factors MYB
MA1774.1 MYB60 Arabidopsis thaliana Tryptophan cluster factors MYB
MA1774.2 MYB60 Arabidopsis thaliana Tryptophan cluster factors MYB
MA1775.1 MYB61 Arabidopsis thaliana Tryptophan cluster factors MYB
Showing 10 profiles of page 335 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.