JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1754.1 ERF073 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1754.2 ERF073 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1755.1 GATA4 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1755.2 GATA4 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1756.1 GRF9 Arabidopsis thaliana C3H zinc finger factors GRF
MA1756.2 GRF9 Arabidopsis thaliana C3H zinc finger factors GRF
MA1757.1 HDG7 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1757.2 HDG7 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1758.1 HSFA1E Arabidopsis thaliana Heat shock factors HSF
MA1758.2 HSFA1E Arabidopsis thaliana Heat shock factors HSF
Showing 10 profiles of page 332 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.