JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1736.2 AT5G04390 Arabidopsis thaliana C2H2 zinc finger factors C2H2
MA1737.1 AT5G05090 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1737.2 AT5G05090 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1738.1 ATMYB31 Arabidopsis thaliana Tryptophan cluster factors MYB
MA1739.1 BHLH122 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA1739.2 BHLH122 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA1740.1 BHLH49 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA1740.2 BHLH49 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA1741.1 BRN2 Arabidopsis thaliana GCM domain factors NAC
MA1742.1 BZIP18 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group I
Showing 10 profiles of page 329 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.