JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1729.2 ZNF680 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1730.1 ZNF708 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1730.2 ZNF708 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1731.1 ZNF768 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1731.2 ZNF768 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1732.1 E2FD Arabidopsis thaliana Fork head/winged helix factors E2F
MA1734.1 AT1G19040 Arabidopsis thaliana GCM domain factors NAC
MA1735.1 AT2G38300 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1735.2 AT2G38300 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1736.1 AT5G04390 Arabidopsis thaliana C2H2 zinc finger factors C2H2
Showing 10 profiles of page 328 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.