JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1702.2 Pdp1 Drosophila melanogaster Basic leucine zipper factors (bZIP) CEBP-related
MA1703.1 pqm-1 Caenorhabditis elegans C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1703.2 pqm-1 Caenorhabditis elegans C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1704.1 zip-8 Caenorhabditis elegans Basic leucine zipper factors (bZIP) Jun-related
MA1704.2 zip-8 Caenorhabditis elegans Basic leucine zipper factors (bZIP) Jun-related
MA1706.1 AT1G14600 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1706.2 AT1G14600 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1707.1 DMRTA1 Homo sapiens DM-type intertwined zinc finger factors DMRT factors
MA1707.2 DMRTA1 Homo sapiens DM-type intertwined zinc finger factors DMRT factors
MA1708.1 ETV7 Homo sapiens Tryptophan cluster factors Ets-related
Showing 10 profiles of page 323 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.